PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_C9299F976.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 889aa    MW: 98030.1 Da    PI: 7.5681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_C9299F976.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.72.9e-2176177190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerr............traetrtgCkaklkvkkek 72 
                            +fY+ YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk     +                 + + +rtgC a+l++k+  
  Traes_2BS_C9299F976.2  76 EFYKVYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetN----AtdvtvaapppppRCPDSRTGCLASLTIKLLP 158
                            6*****************99997666.****************999955550....24455556666668899*************99 PP

                   FAR1  73 .dgkwevtkleleHnHela 90 
                              + ++vt+++ eHnH+la
  Traes_2BS_C9299F976.2 159 sANAFRVTEFVAEHNHPLA 177
                            899**************97 PP

2FAR169.96.2e-22225324290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkw 76 
                            fYn+YA++vGFsvr+s++k++  +g i++r fvCs+eg +++ k++               + r   + trtgC+a++++k +   ++
  Traes_2BS_C9299F976.2 225 FYNRYAEHVGFSVRRSYKKRK--HGVIVSRIFVCSREGVSDRAKHDglasistnagggaPGTPRPGPPPTRTGCQARMVIKITPCRTY 310
                            9*************9976655..9******************9999******99999977777778899******************* PP

                   FAR1  77 evtkleleHnHela 90 
                            +v+k+  eHnH+la
  Traes_2BS_C9299F976.2 311 RVAKFIAEHNHPLA 324
                            ************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1876177IPR004330FAR1 DNA binding domain
PfamPF031016.5E-19225324IPR004330FAR1 DNA binding domain
PfamPF105511.6E-21413506IPR018289MULE transposase domain
PROSITE profilePS5096610.014681728IPR007527Zinc finger, SWIM-type
PfamPF044347.0E-6681727IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6703730IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MSTTAHPPAS LSGDSSPTTS GSSSPSSSAF VAGSDEPALL GPATSTSTPS AAGDDAAVPS  60
SPQMGMYFET EDDAYEFYKV YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK  120
PQDETNATDV TVAAPPPPPR CPDSRTGCLA SLTIKLLPSA NAFRVTEFVA EHNHPLASAV  180
SAVSLAMIPS SSSHHTIAAA ASLPDPRDGP LPEMHFETED DAYAFYNRYA EHVGFSVRRS  240
YKKRKHGVIV SRIFVCSREG VSDRAKHDGL ASISTNAGGG APGTPRPGPP PTRTGCQARM  300
VIKITPCRTY RVAKFIAEHN HPLANSETVH KLRSHKMRAR GHELGAGELH RRKQGKGVQL  360
GDAGAALEYL EGLQVGNPSL YYAVGMAPDG NSAVNFFWAD AKSIIDFRSF GDVVCFDTTY  420
GLNVYGRPFA LFVGVDNHKQ LLVFGAALLY DDGIQSLKWV FQAFADAMRD RQPKTILIDE  480
RSECAIAAAE VWPGSNHCTS VWHIYHSSKR HLKQVFESSK SFGNALSQCL FDCEDEMEFL  540
SAWEKLIEKH DIGESEWLSR LFLEKEKWAL PYRRTVFSAD ILSTLRKDSM INELKRELSE  600
QEDILLFFKR YETMLEEHRS KKLQADVDGN QVTLPIPSLR MLKQSSNAYT PEAFKMFQGE  660
FEAYMNCMSF PCSAVGTVSE YKITLDEKPS EGIVKFDALD GLATCSCRKF ESVGIQCCHV  720
LKVLDLKNIK ELPEQYILKR WRKDARSVRM GEEPNCGSSS IMRSSLDVRF SNMCRMVSLI  780
ASRAAKSEEA MSYIESQSSV LLKHLDEILQ TGYPENGNHD VASSSQAISF VGNHPDHTTQ  840
ARAVAHTANG LTSLLGISAY PESSGQLKVL ICCHVDVSKY ILKTLLFPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563073.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLW5BNQ50.0W5BNQ5_WHEAT; Uncharacterized protein
STRINGMLOC_2737.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-83FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]